PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010914904.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 325aa    MW: 35916.9 Da    PI: 9.0135
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010914904.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.2e-0892116126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC+ f   G C  G++C+FaHg
  XP_010914904.1  92 FKTRLCQKFKT-GSCLWGNNCNFAHG 116
                     79*********.*************8 PP

2zf-CCCH27.65.1e-09148171427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     ++Cr f+    C+yGdrC+F H++
  XP_010914904.1 148 KICRKFFNRQVCPYGDRCTFLHVQ 171
                     79********************86 PP

3zf-CCCH29.41.4e-09205229226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     k ++C  +  tG+C++G+rC FaHg
  XP_010914904.1 205 KAKICYKWETTGHCSFGERCIFAHG 229
                     7789********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.97E-989122IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-491117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-1591124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.76591118IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-592116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-10142173IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-7143173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.206144172IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4146171IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6148171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-12201234IPR000571Zinc finger, CCCH-type
SMARTSM003568.3E-7203230IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-8203234IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.981203231IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-7205229IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MDPPPDRALS FFMPPPPFAT ATSGNVIALR PQNLADQPEF EAPLLTRPRN SDDAPLNPLR  60
NRQPVSTMPR PPNPQFNPSR NPPIRGTSCM FFKTRLCQKF KTGSCLWGNN CNFAHGIEEL  120
RQPPPNWQEF VAEERVNGSD RQRMHKNKIC RKFFNRQVCP YGDRCTFLHV QRESSGMAMG  180
PMAGPDSVGG FSSAADCNGS NQKPKAKICY KWETTGHCSF GERCIFAHGL AELKKSGGHV  240
ELDGGKNGAD PPKPLTNSTN NVPPTKAESS CMHEAQQKGV FPKLDEAQQK GVFPKLAKKL  300
SCIYADWIDG APLCSPHLPQ LSKQS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010914904.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2293446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-44C3H family protein